Publications

Cloudy with a chance of Peptides
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nf-encyclopedia: An Open-Source Proteomics Pipeline
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Building Spectral Libraries from DIA Mass Spec Data
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Calibration Curves for Assessing Quantitative Proteomics
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Talus Bio
Quantification of Transcription Factors and Nuclear Proteins
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Semisupervised Machine Learning for Sensitive Open Modification Spectral Library Searching
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The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data
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De novo mass spectrometry peptide sequencing with a transformer model
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Sequence-to-sequence translation from mass spectra to peptides with a transformer model
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Evaluating proteomics imputation methods with improved criteria
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Evaluating proteomics imputation methods with improved criteria
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Quantification of Transcription Factors and Nuclear Proteins
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